Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 62ChIP-seq
  • 23single cell RNA-seq
  • 22ATAC-seq
  • 22total RNA-seq
  • 4DNase-seq
  • 1pCHi-C
Assay category
  • 62DNA binding
  • 45Transcription
  • 26DNA accessibility
Target of assay
  • 45transcription factor
  • 15control
  • 9RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 29December, 2018
  • 24May, 2022
  • 20October, 2018
  • 11November, 2018
  • 6January, 2019
  • 3October, 2017
  • 1August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 134fastq
  • 95bam
  • 73bed narrowPeak
  • 56bigWig
  • 52bigBed narrowPeak
  • 6txt
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 134Homo sapiens
Biosample type
  • 59tissue
  • 39primary cell
  • 35cell line
  • 1in vitro differentiated cells
Organ
  • 55pancreas
  • 35blood
  • 35bodily fluid
  • liver
  • 17epithelium
  • 13adipose tissue
  • 13connective tissue
  • 9spleen
Project
  • 96AMP
  • 38HPAP
Genome assembly (visualization)
  • 74hg19
  • 56GRCh38
Lab
  • 72AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
organ_slims!
  • liver
BIOSAMPLE
ASSAY

134 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1112
spleen711
omental fat pad611
subcutaneous adipose tissue31
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
cell line
GM1287835
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego