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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
23
single cell RNA-seq
22
ATAC-seq
22
total RNA-seq
4
DNase-seq
1
pCHi-C
Assay category
62
DNA binding
45
Transcription
26
DNA accessibility
Target of assay
45
transcription factor
15
control
9
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
29
December, 2018
24
May, 2022
20
October, 2018
11
November, 2018
6
January, 2019
3
October, 2017
1
August, 2017
1
August, 2018
1
July, 2018
Available data
134
fastq
95
bam
73
bed narrowPeak
56
bigWig
52
bigBed narrowPeak
6
txt
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
134
Homo sapiens
Biosample type
59
tissue
39
primary cell
35
cell line
1
in vitro differentiated cells
Organ
55
pancreas
35
blood
35
bodily fluid
liver
17
epithelium
13
adipose tissue
13
connective tissue
9
spleen
Project
96
AMP
38
HPAP
Genome assembly (visualization)
74
hg19
56
GRCh38
Lab
72
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
organ_slims!
liver
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
spleen
7
1
1
omental fat pad
6
1
1
subcutaneous adipose tissue
3
1
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
cell line
GM12878
35
in vitro differentiated cells
white fat cell
1
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