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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
22
single cell RNA-seq
4
ATAC-seq
4
DNase-seq
1
pCHi-C
Assay category
66
DNA binding
22
Transcription
8
DNA accessibility
Target of assay
49
transcription factor
14
control
9
RNA binding protein
1
chromatin remodeller
Date released
29
December, 2018
22
September, 2020
12
November, 2018
10
November, 2017
9
October, 2018
6
January, 2019
4
December, 2017
2
August, 2017
2
October, 2017
1
August, 2018
Available data
97
fastq
74
bam
60
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
zippedFastqFolder
Organism
97
Homo sapiens
Biosample type
46
cell line
28
tissue
22
primary cell
1
in vitro differentiated cells
Organ
pancreas
35
blood
35
bodily fluid
18
liver
17
epithelium
13
adipose tissue
13
connective tissue
9
spleen
Project
75
AMP
22
HPAP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
75
AMP-T2D consortium
22
Klaus Kaestner, Upenn
organ_slims!
pancreas
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
35
HepG2
11
tissue
spleen
7
1
1
omental fat pad
6
1
1
right lobe of liver
4
1
1
subcutaneous adipose tissue
3
1
liver
1
primary cell
Langerhans cell
22
in vitro differentiated cells
white fat cell
1
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