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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
23
single cell RNA-seq
22
ATAC-seq
22
total RNA-seq
5
DNase-seq
1
pCHi-C
Assay category
70
DNA binding
45
Transcription
27
DNA accessibility
Target of assay
53
transcription factor
14
control
12
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
24
May, 2022
22
December, 2018
20
October, 2018
13
November, 2018
10
November, 2017
6
January, 2019
4
December, 2017
2
August, 2017
2
October, 2017
1
August, 2018
1
July, 2018
Available data
143
fastq
104
bam
83
bed narrowPeak
66
bigWig
63
bigBed narrowPeak
6
txt
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
143
Homo sapiens
Biosample type
57
tissue
46
cell line
39
primary cell
1
in vitro differentiated cells
Organ
55
pancreas
35
blood
35
bodily fluid
18
liver
17
epithelium
13
adipose tissue
13
connective tissue
spleen
Project
105
AMP
38
HPAP
Genome assembly (visualization)
84
hg19
66
GRCh38
Lab
81
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
organ_slims!
spleen
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
11
1
2
omental fat pad
6
1
1
right lobe of liver
4
1
1
subcutaneous adipose tissue
3
1
+ See 1 more…
cell line
GM12878
35
HepG2
11
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
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