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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70ChIP-seq
  • 23single cell RNA-seq
  • 22ATAC-seq
  • 22total RNA-seq
  • 5DNase-seq
  • 1pCHi-C
Assay category
  • 70DNA binding
  • 45Transcription
  • 27DNA accessibility
Target of assay
  • 53transcription factor
  • 14control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 24May, 2022
  • 22December, 2018
  • 20October, 2018
  • 13November, 2018
  • 10November, 2017
  • 6January, 2019
  • 4December, 2017
  • 2August, 2017
  • 2October, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 143fastq
  • 104bam
  • 83bed narrowPeak
  • 66bigWig
  • 63bigBed narrowPeak
  • 6txt
  • 5bed bed3+
  • 5bed broadPeak
  • 5bigBed broadPeak
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 143Homo sapiens
Biosample type
  • 57tissue
  • 46cell line
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 55pancreas
  • 35blood
  • 35bodily fluid
  • 18liver
  • 17epithelium
  • 13adipose tissue
  • 13connective tissue
  • spleen
Project
  • 105AMP
  • 38HPAP
Genome assembly (visualization)
  • 84hg19
  • 66GRCh38
Lab
  • 81AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
organ_slims!
  • spleen
BIOSAMPLE
ASSAY

143 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas1112
omental fat pad611
right lobe of liver411
subcutaneous adipose tissue31
cell line
GM1287835
HepG211
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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