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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 65ChIP-seq
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 65DNA binding
  • 45Transcription
  • 29DNA accessibility
Target of assay
  • 56transcription factor
  • 18control
  • RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 27December, 2018
  • 24May, 2022
  • 14October, 2018
  • 13November, 2018
  • 8November, 2017
  • 6January, 2019
  • 3December, 2017
  • 3October, 2017
  • 2August, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 140fastq
  • 101bam
  • 76bed narrowPeak
  • 59bigWig
  • 55bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 140Homo sapiens
Biosample type
  • 59tissue
  • 41cell line
  • 39primary cell
  • 1in vitro differentiated cells
Organ
  • 52pancreas
  • 32blood
  • 32bodily fluid
  • 17epithelium
  • 15liver
  • 10adipose tissue
  • 10connective tissue
  • 9spleen
Project
  • 102AMP
  • 38HPAP
Genome assembly (visualization)
  • 77hg19
  • 59GRCh38
Lab
  • 78AMP-T2D consortium
  • 38Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

140 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas812
spleen711
omental fat pad311
right lobe of liver311
cell line
GM1287832
HepG29
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
in vitro differentiated cells
white fat cell1
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