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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
6
DNase-seq
1
pCHi-C
Assay category
59
DNA binding
45
Transcription
29
DNA accessibility
Target of assay
56
transcription factor
control
12
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
25
December, 2018
24
May, 2022
13
November, 2018
10
October, 2018
9
November, 2017
6
January, 2019
3
October, 2017
2
August, 2017
2
December, 2017
1
August, 2018
1
July, 2018
Available data
134
fastq
95
bam
88
bed narrowPeak
71
bigWig
67
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
134
Homo sapiens
Biosample type
50
tissue
44
cell line
39
primary cell
1
in vitro differentiated cells
Organ
51
pancreas
34
blood
34
bodily fluid
17
epithelium
15
liver
7
adipose tissue
7
connective tissue
5
spleen
Project
96
AMP
38
HPAP
Genome assembly (visualization)
89
hg19
71
GRCh38
Lab
72
AMP-T2D consortium
38
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
7
1
2
omental fat pad
3
1
1
spleen
3
1
1
right lobe of liver
2
1
1
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cell line
GM12878
34
HepG2
10
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
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