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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 23ATAC-seq
  • 23single cell RNA-seq
  • 22total RNA-seq
  • 21ChIP-seq
  • 6DNase-seq
  • 1pCHi-C
Assay category
  • 45Transcription
  • 29DNA accessibility
  • 21DNA binding
Target of assay
  • transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 38September, 2020
  • 24May, 2022
  • 10October, 2018
  • 7November, 2018
  • 6December, 2018
  • 3October, 2017
  • 2August, 2017
  • 2December, 2017
  • 2November, 2017
  • 1August, 2018
  • 1July, 2018
Available data
  • 96fastq
  • 57bam
  • 32bed narrowPeak
  • 15bigWig
  • 11bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 1bedpe bed3+
  • 1tsv
  • 1zippedFastqFolder
Organism
  • 96Homo sapiens
Biosample type
  • 51tissue
  • 39primary cell
  • 5cell line
  • 1in vitro differentiated cells
Organ
  • 48pancreas
  • 17epithelium
  • 10adipose tissue
  • 10connective tissue
  • 7liver
  • 6spleen
  • 3blood
  • 3bodily fluid
Project
  • 58AMP
  • 38HPAP
Genome assembly (visualization)
  • 33hg19
  • 15GRCh38
Lab
  • 38Klaus Kaestner, Upenn
  • 34AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

96 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans186
body of pancreas142
spleen141
omental fat pad131
right lobe of liver121
primary cell
Langerhans cell22
pancreatic alpha cell115
pancreatic beta cell1
cell line
GM128783
HepG22
in vitro differentiated cells
white fat cell1
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