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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
21
ChIP-seq
6
DNase-seq
1
pCHi-C
Assay category
45
Transcription
29
DNA accessibility
21
DNA binding
Target of assay
transcription factor
18
control
12
RNA binding protein
1
chromatin remodeller
Date released
38
September, 2020
24
May, 2022
10
October, 2018
7
November, 2018
6
December, 2018
3
October, 2017
2
August, 2017
2
December, 2017
2
November, 2017
1
August, 2018
1
July, 2018
Available data
96
fastq
57
bam
32
bed narrowPeak
15
bigWig
11
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
txt
1
bedpe bed3+
1
tsv
1
zippedFastqFolder
Organism
96
Homo sapiens
Biosample type
51
tissue
39
primary cell
5
cell line
1
in vitro differentiated cells
Organ
48
pancreas
17
epithelium
10
adipose tissue
10
connective tissue
7
liver
6
spleen
3
blood
3
bodily fluid
Project
58
AMP
38
HPAP
Genome assembly (visualization)
33
hg19
15
GRCh38
Lab
38
Klaus Kaestner, Upenn
34
AMP-T2D consortium
24
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
96 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
18
6
body of pancreas
1
4
2
spleen
1
4
1
omental fat pad
1
3
1
right lobe of liver
1
2
1
+ See 2 more…
primary cell
Langerhans cell
22
pancreatic alpha cell
1
15
pancreatic beta cell
1
cell line
GM12878
3
HepG2
2
in vitro differentiated cells
white fat cell
1
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