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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124total RNA-seq
  • 85single cell RNA-seq
  • 73ATAC-seq
  • 48snATAC-seq
  • 46WGBS
  • 37ChIP-seq
  • 10DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 209Transcription
  • 131DNA accessibility
  • 46DNA methylation
  • 37DNA binding
  • 13D chromatin structure
Target of assay
  • 15control
  • 12transcription factor
  • 10histone modification
  • 9histone
  • 8chromatin remodeller
  • 6narrow histone mark
  • 3RNA binding protein
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 134May, 2022
  • 108August, 2017
  • 41September, 2018
  • 39February, 2021
  • 25September, 2020
  • 24November, 2018
  • 10October, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 5January, 2019
  • 5November, 2017
  • 5September, 2017
  • 2August, 2018
  • 1December, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
Available data
  • 291fastq
  • 215bam
  • 210bigWig
  • 140tsv
  • 135zippedFastqFolder
  • 54bed narrowPeak
  • 45bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 425Homo sapiens
Biosample type
  • 275primary cell
  • 132tissue
  • 16cell line
  • 2in vitro differentiated cells
Organ
  • 248pancreas
  • 151epithelium
  • 32liver
  • 11connective tissue
  • 10adipose tissue
  • 9spleen
  • 1brain
Project
  • 220AMP
  • 205HPAP
Genome assembly (visualization)
  • 207GRCh38
  • 195hg19
Lab
  • 218AMP-T2D consortium
  • 205Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

425 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1033525
pancreatic beta cell1022316
pancreatic acinar cell429
pancreatic ductal cell424
tissue
islet of Langerhans912
liver132
spleen261
omental fat pad41
body of pancreas22
cell line
HepG25191
in vitro differentiated cells
adipocyte1
white fat cell1
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