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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 52ChIP-seq
  • 4ATAC-seq
  • 3WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 52DNA binding
  • 6DNA accessibility
  • 3DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 20broad histone mark
  • 15control
  • 12narrow histone mark
  • 5transcription factor
Date released
  • 386February, 2021
  • 46August, 2017
  • 12July, 2019
  • 9October, 2018
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2019
Available data
  • 417bam
  • 409bigWig
  • 401tsv
  • 18fastq
  • 8tagAlign
  • 6bed narrowPeak
  • 4bed bed3+
  • 4bigBed narrowPeak
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 464Homo sapiens
Biosample type
  • 462tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 864pancreas
  • 742liver
  • 658connective tissue
  • 484epithelium
  • 465adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 43nerve
  • 33embryo
  • 24blood
  • 24bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 17spleen
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 465AMP
Genome assembly (visualization)
  • 412hg19
  • 408GRCh38
Lab
  • 465AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 5missing controlled_by
files.read_length!
  • 100
BIOSAMPLE
ASSAY

465 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue382231
subcutaneous abdominal adipose tissue363
omental fat pad5512
subcutaneous adipose tissue7411
white adipose tissue5
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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