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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
52
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
52
DNA binding
6
DNA accessibility
3
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
15
control
12
narrow histone mark
5
transcription factor
Date released
386
February, 2021
46
August, 2017
12
July, 2019
9
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2019
Available data
417
bam
409
bigWig
401
tsv
18
fastq
8
tagAlign
6
bed narrowPeak
4
bed bed3+
4
bigBed narrowPeak
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
464
Homo sapiens
Biosample type
462
tissue
2
primary cell
1
in vitro differentiated cells
Organ
864
pancreas
742
liver
658
connective tissue
484
epithelium
465
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
33
embryo
24
blood
24
bodily fluid
22
vein
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
412
hg19
408
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
files.read_length!
100
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
omental fat pad
5
5
1
2
subcutaneous adipose tissue
7
4
1
1
white adipose tissue
5
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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