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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
505
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
505
DNA binding
193
Transcription
28
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
298
transcription factor
103
histone modification
102
control
102
histone
82
recombinant protein
60
narrow histone mark
53
RNA binding protein
42
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
276
November, 2017
194
May, 2020
59
December, 2017
52
August, 2017
49
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
633
bam
580
bigWig
416
fastq
399
bed narrowPeak
316
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
742
Homo sapiens
Biosample type
358
cell line
355
tissue
15
in vitro differentiated cells
14
primary cell
Organ
864
pancreas
742
liver
658
connective tissue
484
epithelium
465
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
33
embryo
24
blood
24
bodily fluid
22
vein
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
742
AMP
Genome assembly (visualization)
583
hg19
489
GRCh38
Lab
671
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.read_length!
100
BIOSAMPLE
ASSAY
742 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
335
14
1
2
1
2
2
1
tissue
liver
145
167
20
2
1
2
1
1
1
1
right lobe of liver
6
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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