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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 309ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 309DNA binding
  • 3Transcription
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 501broad histone mark
  • 410transcription factor
  • 317control
  • 96RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 67November, 2017
  • 50August, 2017
  • 39October, 2019
  • 23May, 2019
  • 23May, 2020
  • 19December, 2017
  • 15October, 2018
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6September, 2017
  • 5November, 2020
  • 4January, 2019
  • 4November, 2018
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
Available data
  • 280bam
  • 142fastq
  • 68tagAlign
  • 23bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 316Homo sapiens
Biosample type
  • 167tissue
  • 77cell line
  • 37in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 102liver
  • 48pancreas
  • 31brain
  • 30epithelium
  • 26connective tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 15adipose tissue
  • 12kidney
  • 11nerve
  • 9artery
  • 7embryo
  • 6musculature of body
  • 4blood
  • 4bodily fluid
  • 4spleen
  • 2vein
  • 1eye
Project
  • 317AMP
Genome assembly (visualization)
  • 32hg19
  • 12GRCh38
Lab
  • 300AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.read_length!
  • 100
BIOSAMPLE
ASSAY

317 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
heart left ventricle6
kidney6
cell line
HepG256
Panc16
EndoC_BH123
GM128784
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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