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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 410ChIP-seq
Assay category
  • 410DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 501broad histone mark
  • 410transcription factor
  • 317control
  • 96RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 210November, 2017
  • 50November, 2018
  • 40August, 2017
  • 40December, 2017
  • 16May, 2021
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 6January, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 2December, 2018
  • 2October, 2018
  • 1November, 2019
Available data
  • 392bigWig
  • 381bam
  • 372bed narrowPeak
  • 350fastq
  • 308bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 17bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 410Homo sapiens
Biosample type
  • 282cell line
  • 69tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 298liver
  • 28connective tissue
  • 17heart
  • 11pancreas
  • 10blood
  • 10bodily fluid
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 5adipose tissue
  • 5artery
  • 3brain
  • 3embryo
  • 3spleen
  • 1eye
Project
  • 410AMP
Genome assembly (visualization)
  • 383hg19
  • 344GRCh38
Lab
  • 382AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 100
BIOSAMPLE
ASSAY

410 results

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Clear Filters
ChIP-seq
cell line
HepG2259
GM1287810
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
islet of Langerhans7
heart left ventricle5
left cardiac atrium5
white adipose tissue5
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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