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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 156ChIP-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 48snATAC-seq
  • 13total RNA-seq
  • 11WGBS
  • 9DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 156DNA accessibility
  • 156DNA binding
  • 98Transcription
  • 11DNA methylation
  • 13D chromatin structure
Target of assay
  • 102transcription factor
  • 41control
  • 20RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 117May, 2022
  • 45February, 2021
  • 42November, 2017
  • 36November, 2018
  • 35October, 2018
  • 32December, 2018
  • 25September, 2020
  • 20August, 2017
  • 15September, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 330fastq
  • 248bam
  • 193bigWig
  • 172bed narrowPeak
  • 139bigBed narrowPeak
  • 94zippedFastqFolder
  • 29tsv
  • 11bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 423Homo sapiens
Biosample type
  • 211primary cell
  • 113tissue
  • 97cell line
  • 2in vitro differentiated cells
Organ
  • 137pancreas
  • 88epithelium
  • 77liver
  • 41blood
  • 41bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 253AMP
  • 170HPAP
Genome assembly (visualization)
  • 196hg19
  • 191GRCh38
Lab
  • 227AMP-T2D consortium
  • 170Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 101
BIOSAMPLE
ASSAY

423 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell3536
pancreatic beta cell232
pancreatic acinar cell92
pancreatic ductal cell42
tissue
islet of Langerhans208
body of pancreas13422
spleen13121
liver132
subcutaneous adipose tissue121
cell line
HepG249511
GM1287841
in vitro differentiated cells
adipocyte1
white fat cell1
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