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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 693ChIP-seq
  • 102single cell RNA-seq
  • 25total RNA-seq
  • 5GRO-seq
  • 5WGBS
  • 4RRBS
  • 2DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 693DNA binding
  • 127Transcription
  • 9DNA methylation
  • 5DNA accessibility
Target of assay
  • 342transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 175August, 2017
  • 90December, 2017
  • 47November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 33February, 2018
  • 32September, 2018
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 821fastq
  • 791bam
  • 681bigWig
  • 522bed narrowPeak
  • 381bigBed narrowPeak
  • 92tsv
  • 87bed broadPeak
  • 78bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 7bed bedMethyl
  • 7bigBed bedMethyl
  • 3tar
Organism
  • 832Homo sapiens
Biosample type
  • 324cell line
  • 207primary cell
  • 171tissue
  • 133in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 219pancreas
  • 144epithelium
  • 71connective tissue
  • 26embryo
  • 20brain
  • 15adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 804AMP
  • 35HPAP
Genome assembly (visualization)
  • 681hg19
  • 629GRCh38
  • 5hg18
Lab
  • 804AMP-T2D consortium
  • 35Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 80missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 101
BIOSAMPLE
ASSAY

839 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
GRO-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell131015
pancreatic beta cell13101
pancreatic endocrine cell23
pancreatic ductal cell137
Langerhans cell19
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1611
brain91
in vitro differentiated cells
adipocyte53
pancreatic endoderm1831
hepatocyte15
definitive endodermal cell811
primitive gut cell811
stem cell
hESC31
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