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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 504ChIP-seq
Assay category
  • 504DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 504transcription factor
  • 501broad histone mark
  • 343control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 242November, 2017
  • 60November, 2018
  • 44August, 2017
  • 42December, 2017
  • 27December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 486bigWig
  • 475bam
  • 462bed narrowPeak
  • 444fastq
  • 398bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 504Homo sapiens
Biosample type
  • 354cell line
  • 91tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 335liver
  • 47blood
  • 47bodily fluid
  • 37connective tissue
  • 19pancreas
  • 17heart
  • 14adipose tissue
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 504AMP
Genome assembly (visualization)
  • 477hg19
  • 438GRCh38
Lab
  • 476AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 32missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 101
BIOSAMPLE
ASSAY

504 results

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Clear Filters
ChIP-seq
cell line
HepG2294
GM1287847
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
body of pancreas9
white adipose tissue9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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