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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
  • 130total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 153DNA binding
  • 147DNA accessibility
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 101transcription factor
  • 41control
  • 18RNA binding protein
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 3chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 107August, 2017
  • 45February, 2021
  • 41September, 2018
  • 39November, 2017
  • 37October, 2018
  • 33December, 2018
  • 28November, 2018
  • 25September, 2020
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 435fastq
  • 353bam
  • 298bigWig
  • 160bed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 127bigBed narrowPeak
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2bed broadPeak
  • 2csv
  • 1bedpe bed3+
Organism
  • 569Homo sapiens
Biosample type
  • 279primary cell
  • 194tissue
  • 95cell line
  • 1in vitro differentiated cells
Organ
  • 293pancreas
  • 157epithelium
  • 68liver
  • 45blood
  • 45bodily fluid
  • 25adipose tissue
  • 25connective tissue
  • 16spleen
Project
  • 358AMP
  • 211HPAP
Genome assembly (visualization)
  • 301hg19
  • 298GRCh38
Lab
  • 332AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
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  • 36
BIOSAMPLE
ASSAY

569 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas1342
spleen1312
liver13
subcutaneous adipose tissue121
cell line
HepG243511
GM1287845
in vitro differentiated cells
white fat cell1
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