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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 455ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2FAIRE-seq
  • 1ATAC-seq
  • 1DNase-seq
Assay category
  • 455DNA binding
  • 209Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 253transcription factor
  • 127histone
  • 127histone modification
  • 82recombinant protein
  • 73control
  • 66broad histone mark
  • 60narrow histone mark
  • 49RNA binding protein
  • 16chromatin remodeller
Date released
  • 171November, 2017
  • 110August, 2017
  • 76February, 2023
  • 64December, 2017
  • 44November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 17February, 2018
  • 16January, 2019
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
  • 1October, 2017
Available data
  • 661fastq
  • 561bam
  • 494bigWig
  • 340bed narrowPeak
  • 251bigBed narrowPeak
  • 98tsv
  • 22bed bed3+
  • 19zippedFastqFolder
  • 4bed bedMethyl
  • 4bed broadPeak
  • 4bigBed bedMethyl
  • 4bigBed broadPeak
  • 3tar
Organism
  • 679Homo sapiens
Biosample type
  • 236primary cell
  • 219cell line
  • 126tissue
  • 96in vitro differentiated cells
  • 2stem cell
Organ
  • 275liver
  • 207pancreas
  • 150epithelium
  • 72connective tissue
  • 16adipose tissue
  • 14blood
  • 14bodily fluid
  • 9embryo
  • 7spleen
  • 1brain
Project
  • 568AMP
  • 111HPAP
Genome assembly (visualization)
  • 482hg19
  • 464GRCh38
  • 5hg18
Lab
  • 568AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 8inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

679 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
FAIRE-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell24210
exocrine cell39
pancreatic beta cell21110
pancreatic endocrine cell23
pancreatic ductal cell137
cell line
HepG2205
GM1287814
tissue
liver481
body of pancreas20
islet of Langerhans10611
white adipose tissue12
pancreas621
in vitro differentiated cells
adipocyte53
hepatocyte15
pancreatic endoderm341
definitive endodermal cell321
primitive gut cell121
stem cell
hESC11
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