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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ChIP-seq
  • 30DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 200DNA binding
  • 35DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 177histone
  • 177histone modification
  • 113narrow histone mark
  • 64broad histone mark
  • 26control
Date released
  • 86October, 2019
  • 82November, 2017
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 12February, 2020
  • 7October, 2017
  • 2March, 2020
  • 1February, 2023
Available data
  • 224bam
  • 205bigWig
  • 189bed narrowPeak
  • 113bigBed narrowPeak
  • 110tagAlign
  • 36bed broadPeak
  • 33bed bed3+
  • 30bigBed broadPeak
  • 26tsv
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1fastq
  • 1tagAlign bed3+
Organism
  • 266Homo sapiens
Biosample type
  • 254tissue
  • 12primary cell
Organ
  • 894pancreas
  • 680connective tissue
  • 669liver
  • 493epithelium
  • 488adipose tissue
  • 393heart
  • 354kidney
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 68blood
  • 68bodily fluid
  • 61eye
  • 43nerve
  • 24spleen
  • 22vein
  • 20lung
  • 19embryo
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 266AMP
Genome assembly (visualization)
  • 203GRCh38
  • 147hg19
Lab
  • 266AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
files.read_length!
  • 36
BIOSAMPLE
ASSAY

266 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain1112111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
cerebellar granule cell2
choroid plexus epithelial cell11
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