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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
7
October, 2017
2
March, 2020
1
February, 2023
Available data
224
bam
205
bigWig
189
bed narrowPeak
113
bigBed narrowPeak
110
tagAlign
36
bed broadPeak
33
bed bed3+
30
bigBed broadPeak
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
fastq
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
254
tissue
12
primary cell
Organ
894
pancreas
680
connective tissue
669
liver
493
epithelium
488
adipose tissue
393
heart
354
kidney
266
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
24
spleen
22
vein
20
lung
19
embryo
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
Genome assembly (visualization)
203
GRCh38
147
hg19
Lab
266
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.read_length!
36
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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