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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 103ATAC-seq
  • 98ChIP-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 123DNA accessibility
  • 98DNA binding
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 79histone
  • 79histone modification
  • 41narrow histone mark
  • 38broad histone mark
  • 15control
  • 7transcription factor
  • 6RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 35October, 2019
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 26May, 2021
  • 20June, 2019
  • 19September, 2020
  • 16December, 2017
  • 16November, 2019
  • 13July, 2019
  • 7August, 2017
  • 7August, 2020
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 286bam
  • 283bigWig
  • 226fastq
  • 156tsv
  • 135bed narrowPeak
  • 80zippedFastqFolder
  • 72bigBed narrowPeak
  • 21bed bed3+
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 492Homo sapiens
Biosample type
  • 378primary cell
  • 79cell line
  • 21in vitro differentiated cells
  • 15tissue
Organ
  • 894pancreas
  • 680connective tissue
  • 669liver
  • 493epithelium
  • 488adipose tissue
  • 393heart
  • 354kidney
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 68blood
  • 68bodily fluid
  • 61eye
  • 43nerve
  • 24spleen
  • 22vein
  • 20lung
  • 19embryo
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 337AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 293hg19
  • 278GRCh38
Lab
  • 335AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 88inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 4inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

493 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell5235212311
pancreatic beta cell2123212161
pancreatic acinar cell498121
pancreatic ductal cell441310
endothelial cell of umbilical vein17221
cell line
EndoC_BH13319151621
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
pancreatic PP cell3
Hepatic endoderm1
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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