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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
434
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
248
transcription factor
96
control
87
histone modification
86
histone
82
recombinant protein
52
narrow histone mark
42
RNA binding protein
34
broad histone mark
7
chromatin remodeller
Date released
210
November, 2017
194
May, 2020
60
December, 2017
50
August, 2017
43
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
561
bam
506
bigWig
343
fastq
335
bed narrowPeak
253
bigBed narrowPeak
174
tsv
74
tagAlign
9
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
669
Homo sapiens
Biosample type
351
tissue
289
cell line
15
in vitro differentiated cells
14
primary cell
Organ
894
pancreas
680
connective tissue
669
liver
493
epithelium
488
adipose tissue
393
heart
354
kidney
266
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
24
spleen
22
vein
20
lung
19
embryo
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
669
AMP
Genome assembly (visualization)
508
hg19
441
GRCh38
Lab
598
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
669 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
DNase-seq
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
139
167
20
3
1
1
1
1
right lobe of liver
10
3
1
1
1
2
cell line
HepG2
266
14
1
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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