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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 434ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 5WGBS
  • 4Hi-C
  • 3DNase-seq
  • 3pCHi-C
  • 3small RNA-seq
  • 2STARR-seq
  • 1RRBS
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 434DNA binding
  • 193Transcription
  • 26DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 248transcription factor
  • 96control
  • 87histone modification
  • 86histone
  • 82recombinant protein
  • 52narrow histone mark
  • 42RNA binding protein
  • 34broad histone mark
  • 7chromatin remodeller
Date released
  • 210November, 2017
  • 194May, 2020
  • 60December, 2017
  • 50August, 2017
  • 43November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 561bam
  • 506bigWig
  • 343fastq
  • 335bed narrowPeak
  • 253bigBed narrowPeak
  • 174tsv
  • 74tagAlign
  • 9bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 669Homo sapiens
Biosample type
  • 351tissue
  • 289cell line
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 894pancreas
  • 680connective tissue
  • 669liver
  • 493epithelium
  • 488adipose tissue
  • 393heart
  • 354kidney
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 68blood
  • 68bodily fluid
  • 61eye
  • 43nerve
  • 24spleen
  • 22vein
  • 20lung
  • 19embryo
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 669AMP
Genome assembly (visualization)
  • 508hg19
  • 441GRCh38
Lab
  • 598AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 3inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

669 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
DNase-seq
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver1391672031111
right lobe of liver1031112
cell line
HepG226614112221
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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