Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 427ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 20DNase-seq
  • 15RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 427DNA binding
  • 118DNA accessibility
  • 57Transcription
  • 23DNA methylation
  • 103D chromatin structure
Target of assay
  • 295transcription factor
  • 89histone
  • 89histone modification
  • 88recombinant protein
  • 53RNA binding protein
  • 46broad histone mark
  • 44control
  • 43narrow histone mark
  • 15chromatin remodeller
  • 3nucleotide modification
Date released
  • 186November, 2017
  • 74October, 2019
  • 56May, 2020
  • 55November, 2018
  • 45December, 2017
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 23November, 2019
  • 20January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1August, 2017
  • 1July, 2018
Available data
  • 528bam
  • 472bigWig
  • 425bed narrowPeak
  • 368bigBed narrowPeak
  • 348fastq
  • 69tsv
  • 25bed bed3+
  • 24bed broadPeak
  • 24bigBed broadPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 2tagAlign
  • 1bed bed3
Organism
  • 669Homo sapiens
Biosample type
  • 352cell line
  • 150primary cell
  • 108tissue
  • 58in vitro differentiated cells
  • 1stem cell
Organ
  • 299liver
  • 83epithelium
  • 62pancreas
  • 55blood
  • 55bodily fluid
  • 39kidney
  • 38vasculature
  • 35blood vessel
  • 19brain
  • 18vein
  • 16heart
  • 11musculature of body
  • 10connective tissue
  • 8embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 640AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 516hg19
  • 460GRCh38
Lab
  • 625AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 4missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 36
BIOSAMPLE
ASSAY

669 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2225152112
GM1287855
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
macrophage11
skeletal muscle satellite cell8
tissue
liver361
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego