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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 452ChIP-seq
Assay category
  • 452DNA binding
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 289control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 86August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 42November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 10December, 2017
  • 9August, 2021
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
  • 4October, 2017
  • 1February, 2018
Available data
  • 379bigWig
  • 374bed narrowPeak
  • 330bam
  • 219bigBed narrowPeak
  • 125tagAlign
  • 69fastq
  • 16bed broadPeak
  • 2bigBed broadPeak
  • 1bed bed3+
Organism
  • 452Homo sapiens
Biosample type
  • 286tissue
  • 110primary cell
  • 45in vitro differentiated cells
  • 11cell line
Organ
  • 64brain
  • 61pancreas
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 38epithelium
  • 34limb
  • 34liver
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4spleen
Project
  • 408AMP
  • 44T1D
Genome assembly (visualization)
  • 345GRCh38
  • 323hg19
Lab
  • 357AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 4inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

452 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell10
hepatocyte7
neural progenitor cell7
definitive endodermal cell1
cell line
EndoC_BH16
Panc14
HepG21
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