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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 281ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 281DNA binding
  • 3Transcription
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 289control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 58November, 2017
  • 39October, 2019
  • 33August, 2017
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 14April, 2019
  • 14December, 2017
  • 12August, 2021
  • 9May, 2021
  • 8June, 2019
  • 6November, 2018
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3January, 2019
  • 3July, 2019
  • 2November, 2019
  • 1October, 2017
Available data
  • 252bam
  • 114fastq
  • 64tagAlign
  • 11bigWig
  • 3tsv
  • 2bed bed3+
Organism
  • 289Homo sapiens
Biosample type
  • 174tissue
  • 72cell line
  • 24in vitro differentiated cells
  • 19primary cell
Organ
  • 96liver
  • 34connective tissue
  • 33pancreas
  • 26brain
  • 23adipose tissue
  • 20blood vessel
  • 20heart
  • 20vasculature
  • 17limb
  • 15epithelium
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6musculature of body
  • 5blood
  • 5bodily fluid
  • 2embryo
  • 2vein
  • 1eye
Project
  • 289AMP
Genome assembly (visualization)
  • 13hg19
  • 5GRCh38
Lab
  • 272AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
files.read_length!
  • 36
BIOSAMPLE
ASSAY

289 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver41
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
islet of Langerhans72
cell line
HepG250
Panc16
EndoC_BH123
GM128785
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell5
Hepatic endoderm1
hepatocyte1
primary cell
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
endothelial cell of umbilical vein2
epithelial cell of proximal tubule2
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