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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 922ChIP-seq
Assay category
  • 922DNA binding
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 289control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 196October, 2019
  • 156August, 2017
  • 140May, 2021
  • 92May, 2019
  • 70November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 18December, 2017
  • 10November, 2019
  • 7January, 2019
  • 5October, 2017
  • 3March, 2020
  • 2February, 2018
Available data
  • 776bigWig
  • 761bed narrowPeak
  • 691bam
  • 347bigBed narrowPeak
  • 286tagAlign
  • 135fastq
  • 28bed broadPeak
  • 6bed bed3+
  • 2bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 922Homo sapiens
Biosample type
  • 600tissue
  • 212primary cell
  • 86in vitro differentiated cells
  • 23cell line
  • 1stem cell
Organ
  • 177brain
  • 122pancreas
  • 97heart
  • 87liver
  • 79epithelium
  • 77connective tissue
  • 69blood vessel
  • 69vasculature
  • 49limb
  • 33musculature of body
  • 31adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 834AMP
  • 88T1D
Genome assembly (visualization)
  • 713GRCh38
  • 691hg19
Lab
  • 750AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
Audit category:
  • 46missing controlled_by
Audit category:
  • 12inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

922 results

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Clear Filters
ChIP-seq
tissue
liver64
islet of Langerhans40
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell20
neural progenitor cell14
hepatocyte12
definitive endodermal cell2
cell line
EndoC_BH112
Panc17
HepG23
GM128781
stem cell
hESC1
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