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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 468ChIP-seq
Assay category
  • 468DNA binding
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 289control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 141October, 2019
  • 68August, 2017
  • 64May, 2021
  • 34May, 2019
  • 28November, 2017
  • 27May, 2020
  • 23April, 2019
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8December, 2017
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 1February, 2018
  • 1October, 2017
Available data
  • 395bigWig
  • 385bed narrowPeak
  • 359bam
  • 161tagAlign
  • 128bigBed narrowPeak
  • 64fastq
  • 12bed broadPeak
  • 5bed bed3+
  • 1tagAlign bed3+
Organism
  • 468Homo sapiens
Biosample type
  • 313tissue
  • 102primary cell
  • 40in vitro differentiated cells
  • 12cell line
  • 1stem cell
Organ
  • 113brain
  • 61pancreas
  • 52liver
  • 41epithelium
  • 40heart
  • 32connective tissue
  • 24blood vessel
  • 24vasculature
  • 15kidney
  • 15limb
  • 13musculature of body
  • 11adipose tissue
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 424AMP
  • 44T1D
Genome assembly (visualization)
  • 366GRCh38
  • 366hg19
Lab
  • 391AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 8inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

468 results

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Clear Filters
ChIP-seq
tissue
liver41
islet of Langerhans32
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
in vitro differentiated cells
adipocyte16
embryonic stem cell10
neural progenitor cell7
hepatocyte5
definitive endodermal cell1
cell line
EndoC_BH16
Panc13
HepG22
GM128781
stem cell
hESC1
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