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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 414ChIP-seq
Assay category
  • 414DNA binding
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 289control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 161November, 2017
  • 57November, 2018
  • 43August, 2017
  • 36December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 397bigWig
  • 386bam
  • 370bed narrowPeak
  • 354fastq
  • 312bigBed narrowPeak
  • 17bed bed3+
  • 9tagAlign
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3tar
Organism
  • 414Homo sapiens
Biosample type
  • 274cell line
  • 90tissue
  • 45in vitro differentiated cells
  • 5primary cell
Organ
  • 248liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 18pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 7blood vessel
  • 7epithelium
  • 7vasculature
  • 6spleen
  • 5artery
  • 2embryo
  • 1eye
Project
  • 414AMP
Genome assembly (visualization)
  • 388hg19
  • 366GRCh38
Lab
  • 386AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 13inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

414 results

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Clear Filters
ChIP-seq
cell line
HepG2210
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver34
white adipose tissue12
body of pancreas9
islet of Langerhans6
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
hepatocyte2
pancreatic endoderm2
primary cell
cardiac fibroblast1
cardiac muscle cell1
epithelial cell of proximal tubule1
kidney epithelial cell1
retinal pigment epithelial cell1
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