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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
296
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
408
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
10
December, 2019
8
January, 2018
7
August, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
284
fastq
279
bam
269
bigWig
139
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
401
Homo sapiens
Biosample type
284
tissue
68
in vitro differentiated cells
56
primary cell
Organ
185
pancreas
125
connective tissue
57
adipose tissue
54
liver
26
epithelium
26
musculature of body
Project
408
AMP
Genome assembly (visualization)
273
hg19
246
GRCh38
Lab
408
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.read_length!
41
BIOSAMPLE
ASSAY
408 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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