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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1527
total RNA-seq
848
ChIP-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
70
snATAC-seq
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1918
Transcription
848
DNA binding
818
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Target of assay
histone modification
1015
histone
513
narrow histone mark
508
transcription factor
501
broad histone mark
343
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
700
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
206
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
July, 2025
Available data
2601
bam
2294
bigWig
1601
tsv
1101
fastq
966
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
243
bed bed3+
161
txt
112
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tbi
1
vcf
Organism
3884
Homo sapiens
Biosample type
2144
tissue
836
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
791
pancreas
688
liver
604
connective tissue
457
adipose tissue
384
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
64
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3358
AMP
309
HPAP
156
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
2423
hg19
2318
GRCh38
5
hg18
Lab
3061
AMP-T2D consortium
309
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Audit category:
320
inconsistent ontology term
28
inconsistent control
27
audit script error
1
inconsistent replicate
Audit category:
29
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.read_length!
49
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
3894 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
...and 8 more
tissue
islet of Langerhans
292
16
68
6
1
7
4
3
1
4
1
adipose tissue
382
1
3
3
1