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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 125total RNA-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 51ATAC-seq
  • 32snATAC-seq
  • 10DNase-seq
  • 1pCHi-C
Assay category
  • 210Transcription
  • 163DNA binding
  • 93DNA accessibility
  • 52DNA methylation
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 119May, 2022
  • 107August, 2017
  • 44November, 2017
  • 41September, 2018
  • 40November, 2018
  • 37October, 2018
  • 32December, 2018
  • 29February, 2021
  • 25September, 2020
  • 9July, 2018
  • 8January, 2019
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
Available data
  • 424fastq
  • 359bam
  • 305bigWig
  • 172bed narrowPeak
  • 141tsv
  • 139bigBed narrowPeak
  • 96zippedFastqFolder
  • 11bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 519Homo sapiens
Biosample type
  • 218primary cell
  • 201tissue
  • 98cell line
  • 2in vitro differentiated cells
Organ
  • 247pancreas
  • 110epithelium
  • 74liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 363AMP
  • 156HPAP
Genome assembly (visualization)
  • 308hg19
  • 302GRCh38
Lab
  • 338AMP-T2D consortium
  • 156Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 11audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

519 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
primary cell
Langerhans cell6732
pancreatic alpha cell1033110
pancreatic beta cell102167
pancreatic ductal cell424
pancreatic acinar cell423
tissue
islet of Langerhans9719
body of pancreas13242
spleen13211
liver132
subcutaneous adipose tissue121
cell line
HepG2521
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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