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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 568ChIP-seq
  • 107total RNA-seq
  • 101single cell RNA-seq
  • 6WGBS
  • 4RRBS
  • 3DNase-seq
  • 1FAIRE-seq
Assay category
  • 568DNA binding
  • 208Transcription
  • 10DNA methylation
  • 4DNA accessibility
Target of assay
  • 270transcription factor
  • 207histone
  • 207histone modification
  • 103broad histone mark
  • 103narrow histone mark
  • 89control
  • 70recombinant protein
  • 67RNA binding protein
  • 22chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 228November, 2017
  • 161August, 2017
  • 76February, 2023
  • 43November, 2018
  • 42December, 2017
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 34September, 2020
  • 32September, 2018
  • 23October, 2018
  • 12January, 2019
  • 9October, 2017
  • 6September, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 773fastq
  • 672bam
  • 595bigWig
  • 439bed narrowPeak
  • 314bigBed narrowPeak
  • 98tsv
  • 84bed broadPeak
  • 75bigBed broadPeak
  • 40bed bed3+
  • 39tagAlign
  • 18zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 783Homo sapiens
Biosample type
  • 283primary cell
  • 266cell line
  • 121in vitro differentiated cells
  • 119tissue
  • 1stem cell
Organ
  • 287liver
  • 250pancreas
  • 180epithelium
  • 69connective tissue
  • 21embryo
  • 19brain
  • 16adipose tissue
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 680AMP
  • 110HPAP
Genome assembly (visualization)
  • 600hg19
  • 553GRCh38
Lab
  • 680AMP-T2D consortium
  • 110Klaus Kaestner, Upenn
Audit category:
  • 10inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 81missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 50
BIOSAMPLE
ASSAY

790 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
cell line
HepG2256
GM1287810
in vitro differentiated cells
adipocyte50
pancreatic endoderm144
hepatocyte15
definitive endodermal cell62
primitive gut cell62
tissue
islet of Langerhans26611
body of pancreas20
pancreas122
brain91
liver811
stem cell
hESC1
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