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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
14
total RNA-seq
Assay category
17
DNA binding
14
Transcription
Target of assay
11
histone
11
histone modification
8
narrow histone mark
5
control
3
broad histone mark
1
transcription factor
Date released
13
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
Available data
31
bam
25
bigWig
21
fastq
14
tsv
11
bed narrowPeak
2
bed bed3+
Organism
31
Homo sapiens
Biosample type
23
in vitro differentiated cells
8
cell line
Organ
891
pancreas
686
liver
679
connective tissue
489
adipose tissue
476
epithelium
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
64
blood
64
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
31
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.read_length!
50
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
14
4
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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