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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 453ChIP-seq
  • 184total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 3Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 453DNA binding
  • 188Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 275transcription factor
  • 99histone modification
  • 98histone
  • 76control
  • 70recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 38broad histone mark
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 262November, 2017
  • 194May, 2020
  • 49November, 2018
  • 47August, 2017
  • 40May, 2022
  • 35August, 2021
  • 28December, 2017
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
Available data
  • 577bam
  • 550bigWig
  • 379bed narrowPeak
  • 360fastq
  • 297bigBed narrowPeak
  • 169tsv
  • 86tagAlign
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 686Homo sapiens
Biosample type
  • 342cell line
  • 315tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 891pancreas
  • 686liver
  • 679connective tissue
  • 489adipose tissue
  • 476epithelium
  • 393heart
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 64blood
  • 64bodily fluid
  • 61eye
  • 43nerve
  • 31embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 686AMP
Genome assembly (visualization)
  • 553hg19
  • 464GRCh38
Lab
  • 615AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 50
BIOSAMPLE
ASSAY

686 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG23259111221
tissue
liver99167202311111
right lobe of liver1031212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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