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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
ChIP-seq
184
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
453
DNA binding
188
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
275
transcription factor
99
histone modification
98
histone
76
control
70
recombinant protein
60
narrow histone mark
58
RNA binding protein
38
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
262
November, 2017
194
May, 2020
49
November, 2018
47
August, 2017
40
May, 2022
35
August, 2021
28
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
Available data
577
bam
550
bigWig
379
bed narrowPeak
360
fastq
297
bigBed narrowPeak
169
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
686
Homo sapiens
Biosample type
342
cell line
315
tissue
15
in vitro differentiated cells
14
primary cell
Organ
891
pancreas
686
liver
679
connective tissue
489
adipose tissue
476
epithelium
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
64
blood
64
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
686
AMP
Genome assembly (visualization)
553
hg19
464
GRCh38
Lab
615
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.read_length!
50
BIOSAMPLE
ASSAY
686 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
325
9
1
1
1
2
2
1
tissue
liver
99
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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