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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 678ChIP-seq
  • 236total RNA-seq
  • 194ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19RRBS
  • 18Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 678DNA binding
  • 342Transcription
  • 258DNA accessibility
  • 28DNA methylation
  • 183D chromatin structure
Target of assay
  • 351transcription factor
  • 255histone
  • 255histone modification
  • 152narrow histone mark
  • 103broad histone mark
  • 81RNA binding protein
  • 76recombinant protein
  • 75control
  • 29chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 263November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 62June, 2019
  • 60July, 2019
  • 59November, 2018
  • 53February, 2023
  • 51August, 2017
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 29December, 2017
  • 27December, 2018
  • 25February, 2020
  • 24November, 2019
  • 14May, 2019
  • 13January, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 4March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1075bam
  • 997bigWig
  • 659bed narrowPeak
  • 545fastq
  • 469bigBed narrowPeak
  • 366tsv
  • 142tagAlign
  • 120bed broadPeak
  • 119bigBed broadPeak
  • 96bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1394Homo sapiens
Biosample type
  • 476primary cell
  • 422cell line
  • 318tissue
  • 176in vitro differentiated cells
  • 2stem cell
Organ
  • 357liver
  • 199pancreas
  • 169epithelium
  • 96brain
  • 63connective tissue
  • 58kidney
  • 55blood
  • 55bodily fluid
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 15adipose tissue
  • 12embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1223AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1077hg19
  • 929GRCh38
Lab
  • 1177AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 6audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 24missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1394 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG23031212
GM1287853
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221036611234
liver1131111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte41811
hepatocyte15
stem cell
hESC1
mesenchymal stem cell1
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