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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 502ChIP-seq
  • 90ATAC-seq
  • 46total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 9Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 502DNA binding
  • 120DNA accessibility
  • 52Transcription
  • 27DNA methylation
  • 93D chromatin structure
Target of assay
  • 323transcription factor
  • 122histone
  • 122histone modification
  • 76recombinant protein
  • 72RNA binding protein
  • 62narrow histone mark
  • 60broad histone mark
  • 58control
  • 29chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 263November, 2017
  • 74October, 2019
  • 58November, 2018
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 27December, 2018
  • 26December, 2017
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 13January, 2019
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 599bam
  • 536bigWig
  • 490bed narrowPeak
  • 430bigBed narrowPeak
  • 423fastq
  • 95bed broadPeak
  • 95bigBed broadPeak
  • 64tsv
  • 33bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 744Homo sapiens
Biosample type
  • 422cell line
  • 174primary cell
  • 80tissue
  • 67in vitro differentiated cells
  • 1stem cell
Organ
  • 341liver
  • 88epithelium
  • 63pancreas
  • 53blood
  • 53bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 10embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 715AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 589hg19
  • 507GRCh38
Lab
  • 700AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 2audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

744 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG23031212
GM1287853
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
islet of Langerhans1911
body of pancreas7
brain511
liver511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC1
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