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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
1002
histone modification
1001
histone
511
narrow histone mark
489
broad histone mark
439
transcription factor
305
control
113
RNA binding protein
77
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
5
January, 2019
3
August, 2017
2
December, 2018
1
December, 2017
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
31
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
29
cell line
3
in vitro differentiated cells
1
primary cell
Organ
21
liver
9
blood
9
bodily fluid
2
connective tissue
1
epithelium
Project
33
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.read_length!
50
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
20
GM12878
9
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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