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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 297ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 297DNA binding
  • 3Transcription
Target of assay
  • 1002histone modification
  • 1001histone
  • 511narrow histone mark
  • 489broad histone mark
  • 439transcription factor
  • 305control
  • 113RNA binding protein
  • 77recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 49November, 2017
  • 47August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 14April, 2019
  • 12August, 2021
  • 11December, 2017
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
  • 1January, 2019
Available data
  • 268bam
  • 130fastq
  • 68tagAlign
  • 22bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 304Homo sapiens
Biosample type
  • 176tissue
  • 58cell line
  • 35in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 76liver
  • 52pancreas
  • 35connective tissue
  • 31brain
  • 29epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6musculature of body
  • 5embryo
  • 3blood
  • 3bodily fluid
  • 2vein
  • 1eye
Project
  • 305AMP
Genome assembly (visualization)
  • 31hg19
  • 12GRCh38
Lab
  • 288AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
files.read_length!
  • 50
BIOSAMPLE
ASSAY

305 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver33
islet of Langerhans122
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG238
Panc16
EndoC_BH123
GM128783
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm4
definitive endodermal cell2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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