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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 439ChIP-seq
Assay category
  • 439DNA binding
Target of assay
  • 1002histone modification
  • 1001histone
  • 511narrow histone mark
  • 489broad histone mark
  • 439transcription factor
  • 305control
  • 113RNA binding protein
  • 77recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 213November, 2017
  • 60November, 2018
  • 41August, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 12January, 2019
  • 11August, 2021
  • 10December, 2017
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 422bigWig
  • 410bam
  • 401bed narrowPeak
  • 379fastq
  • 346bigBed narrowPeak
  • 45bed broadPeak
  • 45bigBed broadPeak
  • 14bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 439Homo sapiens
Biosample type
  • 328cell line
  • 60tissue
  • 41in vitro differentiated cells
  • 10primary cell
Organ
  • 275liver
  • 49blood
  • 49bodily fluid
  • 35connective tissue
  • 19pancreas
  • 17heart
  • 15adipose tissue
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 1embryo
  • 1eye
Project
  • 439AMP
Genome assembly (visualization)
  • 413hg19
  • 378GRCh38
Lab
  • 411AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 14inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 33missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 50
BIOSAMPLE
ASSAY

439 results

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Clear Filters
ChIP-seq
cell line
HepG2266
GM1287849
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
white adipose tissue10
body of pancreas9
islet of Langerhans7
spleen6
heart left ventricle5
in vitro differentiated cells
adipocyte19
embryonic stem cell12
cardiomyocytes3
hepatocyte2
Posterior foregut1
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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