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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 974ChIP-seq
Assay category
  • 974DNA binding
Target of assay
  • 974histone modification
  • 973histone
  • 505transcription factor
  • 491narrow histone mark
  • 481broad histone mark
  • 342control
  • 112RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 196October, 2019
  • 187August, 2017
  • 140May, 2021
  • 92May, 2019
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 12October, 2017
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
  • 1September, 2018
Available data
  • 826bigWig
  • 820bed narrowPeak
  • 742bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • 187fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 22bed bed3+
  • 1tagAlign bed3+
Organism
  • 968Homo sapiens
Biosample type
  • 625tissue
  • 197primary cell
  • 112in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 187brain
  • 108pancreas
  • 103liver
  • 97heart
  • 78connective tissue
  • 72epithelium
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 886AMP
  • 88T1D
Genome assembly (visualization)
  • 761GRCh38
  • 741hg19
Lab
  • 802AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 51
BIOSAMPLE
ASSAY

974 results

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Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans48
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
skeletal muscle myoblast12
epithelial cell of proximal tubule7
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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