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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 692ChIP-seq
  • 107total RNA-seq
  • 64single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 692DNA binding
  • 171Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 341transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 66RNA binding protein
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 179August, 2017
  • 90December, 2017
  • 76February, 2023
  • 48November, 2018
  • 39February, 2018
  • 34July, 2018
  • 32September, 2018
  • 26September, 2020
  • 23October, 2018
  • 17April, 2018
  • 15January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2June, 2018
  • 1August, 2018
Available data
  • 875fastq
  • 769bam
  • 659bigWig
  • 519bed narrowPeak
  • 378bigBed narrowPeak
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 69tsv
  • 51bed bed3+
  • 39tagAlign
  • 10zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 877Homo sapiens
Biosample type
  • 320cell line
  • 252primary cell
  • 169tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 230pancreas
  • 159epithelium
  • 73connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 11blood
  • 11bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 782AMP
  • 102HPAP
Genome assembly (visualization)
  • 658hg19
  • 606GRCh38
  • 5hg18
Lab
  • 782AMP-T2D consortium
  • 102Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 75
BIOSAMPLE
ASSAY

884 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287811
primary cell
pancreatic alpha cell13426
exocrine cell39
pancreatic beta cell13116
pancreatic endocrine cell23
pancreatic ductal cell135
tissue
liver5411
islet of Langerhans2811
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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