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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 147ChIP-seq
  • 130total RNA-seq
  • 89ATAC-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 10DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 147DNA accessibility
  • 147DNA binding
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 106transcription factor
  • 30control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
Date released
  • 158May, 2022
  • 109August, 2017
  • 45February, 2021
  • 43November, 2017
  • 41September, 2018
  • 34November, 2018
  • 33December, 2018
  • 29October, 2018
  • 22September, 2020
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 429fastq
  • 357bam
  • 303bigWig
  • 175bed narrowPeak
  • 146tsv
  • 142bigBed narrowPeak
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 563Homo sapiens
Biosample type
  • 270primary cell
  • 188tissue
  • 103cell line
  • 2in vitro differentiated cells
Organ
  • 285pancreas
  • 147epithelium
  • 79liver
  • 45blood
  • 45bodily fluid
  • 19connective tissue
  • 18adipose tissue
  • 11spleen
  • 1brain
Project
  • 362AMP
  • 201HPAP
Genome assembly (visualization)
  • 316hg19
  • 300GRCh38
Lab
  • 336AMP-T2D consortium
  • 201Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.read_length!
  • 76
BIOSAMPLE
ASSAY

563 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1028331
pancreatic beta cell1020216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas13422
liver132
spleen7121
subcutaneous adipose tissue81
cell line
HepG251511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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