Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 517ChIP-seq
  • 107total RNA-seq
  • 101single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 517DNA binding
  • 208Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 243transcription factor
  • 156histone
  • 156histone modification
  • 116control
  • 78broad histone mark
  • 77narrow histone mark
  • 56RNA binding protein
  • 14chromatin remodeller
  • 12recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 210November, 2017
  • 147August, 2017
  • 76February, 2023
  • 69December, 2017
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 34September, 2020
  • 32September, 2018
  • 28November, 2018
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 5January, 2019
  • 2August, 2018
  • 2June, 2018
  • 2October, 2018
Available data
  • 729fastq
  • 623bam
  • 525bigWig
  • 356bed narrowPeak
  • 245bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 18zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 739Homo sapiens
Biosample type
  • 282primary cell
  • 226cell line
  • 141tissue
  • 93in vitro differentiated cells
  • 4stem cell
Organ
  • 277liver
  • 237pancreas
  • 166epithelium
  • 42connective tissue
  • 27embryo
  • 20brain
  • 17adipose tissue
  • 6vasculature
  • 5blood
  • 5bodily fluid
  • 3blood vessel
  • 2musculature of body
Project
  • 636AMP
  • 110HPAP
Genome assembly (visualization)
  • 527hg19
  • 472GRCh38
  • 5hg18
Lab
  • 636AMP-T2D consortium
  • 110Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 81missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

746 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
cell line
HepG2221
GM128785
tissue
liver5411
islet of Langerhans28611
pancreas1621
white adipose tissue12
brain91
in vitro differentiated cells
pancreatic endoderm1841
adipocyte22
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego