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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 264ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 5DNase-seq
  • 1FAIRE-seq
Assay category
  • 264DNA binding
  • 89Transcription
  • 15DNA methylation
  • 11DNA accessibility
Target of assay
  • 174histone modification
  • 173histone
  • 97broad histone mark
  • 75narrow histone mark
  • 49control
  • 41transcription factor
  • 4RNA binding protein
  • 3chromatin remodeller
Date released
  • 715February, 2021
  • 399May, 2021
  • 379August, 2017
  • 341May, 2020
  • 335November, 2017
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 80April, 2019
  • 73December, 2017
  • 73September, 2018
  • 64March, 2020
  • 62November, 2018
  • 61November, 2019
  • 55September, 2020
  • 49April, 2018
  • 47October, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 33December, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 18January, 2019
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 255fastq
  • 250bam
  • 241bigWig
  • 111bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 41bed broadPeak
  • 41bigBed narrowPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 372Homo sapiens
Biosample type
  • 284tissue
  • 58primary cell
  • 37in vitro differentiated cells
Organ
  • 188pancreas
  • 94connective tissue
  • 57adipose tissue
  • 54liver
  • 29epithelium
  • 26musculature of body
Project
  • 379AMP
Genome assembly (visualization)
  • 245hg19
  • 218GRCh38
Lab
  • 379AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

379 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans428911
liver4831
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
primary cell
skeletal muscle myoblast1412
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
in vitro differentiated cells
adipocyte361
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