Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 113ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 113DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 54histone
  • 54histone modification
  • 34transcription factor
  • 32broad histone mark
  • 25control
  • 21narrow histone mark
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 94August, 2017
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 14October, 2018
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 553bam
  • 540bigWig
  • 478tsv
  • 61fastq
  • 45bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 643Homo sapiens
Biosample type
  • 538tissue
  • 66in vitro differentiated cells
  • 39primary cell
  • 1stem cell
Organ
  • 916pancreas
  • 682liver
  • 644connective tissue
  • 499epithelium
  • 482adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 59blood
  • 59bodily fluid
  • 43nerve
  • 37embryo
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 12spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 643AMP
  • 1T1D
Genome assembly (visualization)
  • 559hg19
  • 536GRCh38
Lab
  • 639AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
files.read_length!
  • 76
BIOSAMPLE
ASSAY

644 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue78111
omental fat pad56121
in vitro differentiated cells
adipocyte536811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego