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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
443
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
443
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
251
transcription factor
104
control
85
histone modification
84
histone
56
RNA binding protein
52
narrow histone mark
32
broad histone mark
20
chromatin remodeller
12
recombinant protein
2
other context
2
other post-translational modification
Date released
244
November, 2017
194
May, 2020
54
August, 2017
42
December, 2017
40
May, 2022
36
November, 2018
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
572
bam
518
bigWig
356
fastq
337
bed narrowPeak
254
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
682
Homo sapiens
Biosample type
355
tissue
313
cell line
14
primary cell
Organ
916
pancreas
682
liver
644
connective tissue
499
epithelium
482
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
12
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
682
AMP
Genome assembly (visualization)
524
hg19
427
GRCh38
Lab
611
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.read_length!
76
BIOSAMPLE
ASSAY
682 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
4
3
1
2
1
2
cell line
HepG2
290
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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