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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1671ChIP-seq
  • 521ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1671DNA binding
  • 821DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 945histone modification
  • 944histone
  • 483narrow histone mark
  • 460broad histone mark
  • 409transcription factor
  • 315control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 335November, 2017
  • 288October, 2019
  • 283August, 2017
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 133August, 2021
  • 120May, 2019
  • 110February, 2023
  • 80April, 2019
  • 73December, 2017
  • 66February, 2021
  • 61November, 2018
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 45October, 2018
  • 41November, 2019
  • 40May, 2024
  • 33December, 2018
  • 24February, 2018
  • 23October, 2017
  • 18January, 2019
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 5March, 2019
  • 3October, 2022
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1857bam
  • 1652bigWig
  • 1641bed narrowPeak
  • 896bigBed narrowPeak
  • 782fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2766Homo sapiens
Biosample type
  • 1404tissue
  • 703primary cell
  • 441cell line
  • 210in vitro differentiated cells
  • 8stem cell
Organ
  • 492liver
  • 419pancreas
  • 295epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 171vasculature
  • 168connective tissue
  • 165blood vessel
  • 119limb
  • 88musculature of body
  • 85artery
  • 81adipose tissue
  • 59blood
  • 59bodily fluid
  • 42eye
  • 42nerve
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 12spleen
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2435AMP
  • 184T1D
  • 137HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1708hg19
  • 1611GRCh38
  • 5hg18
Lab
  • 2170AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 137Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 127inconsistent ontology term
  • 33audit script error
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 87missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

2766 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver1452023111
islet of Langerhans7168174311
kidney2775136111
heart left ventricle35234111
coronary artery5362
primary cell
monocyte8515211
pancreatic alpha cell1328311
pancreatic beta cell1320161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG2290115221
GM12878501
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
embryonic stem cell4061
adipocyte36811
neural progenitor cell2110
pancreatic endoderm181
definitive endodermal cell81
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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