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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 464ChIP-seq
Assay category
  • 464DNA binding
Target of assay
  • 951histone modification
  • 950histone
  • 485narrow histone mark
  • 464broad histone mark
  • 409transcription factor
  • 321control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 97August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 17September, 2018
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 8October, 2018
  • 6November, 2019
  • 5December, 2017
Available data
  • 390bigWig
  • 383bed narrowPeak
  • 341bam
  • 217bigBed narrowPeak
  • 147tagAlign
  • 81fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 460Homo sapiens
Biosample type
  • 285tissue
  • 122primary cell
  • 37in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 70brain
  • 67pancreas
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 37epithelium
  • 34limb
  • 32connective tissue
  • 32liver
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
Project
  • 420AMP
  • 44T1D
Genome assembly (visualization)
  • 355GRCh38
  • 334hg19
Lab
  • 369AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

464 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
embryonic stem cell11
adipocyte8
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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