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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 313ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 313DNA binding
  • 3Transcription
Target of assay
  • 951histone modification
  • 950histone
  • 485narrow histone mark
  • 464broad histone mark
  • 409transcription factor
  • 321control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 69November, 2017
  • 49August, 2017
  • 39October, 2019
  • 23May, 2019
  • 23May, 2020
  • 19December, 2017
  • 17October, 2018
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3January, 2019
  • 3July, 2019
  • 3October, 2017
  • 2November, 2018
  • 2November, 2019
Available data
  • 284bam
  • 146fastq
  • 68tagAlign
  • 23bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 320Homo sapiens
Biosample type
  • 170tissue
  • 80cell line
  • 35in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 104liver
  • 50pancreas
  • 31brain
  • 29epithelium
  • 25connective tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 15adipose tissue
  • 12kidney
  • 11nerve
  • 9artery
  • 7embryo
  • 6musculature of body
  • 5blood
  • 5bodily fluid
  • 4spleen
  • 2vein
  • 1eye
Project
  • 321AMP
Genome assembly (visualization)
  • 32hg19
  • 12GRCh38
Lab
  • 304AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.read_length!
  • 76
BIOSAMPLE
ASSAY

321 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
body of pancreas6
heart left ventricle6
cell line
HepG258
Panc16
EndoC_BH123
GM128785
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte7
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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