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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 951ChIP-seq
Assay category
  • 951DNA binding
Target of assay
  • 951histone modification
  • 950histone
  • 485narrow histone mark
  • 464broad histone mark
  • 409transcription factor
  • 321control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 196October, 2019
  • 174August, 2017
  • 140May, 2021
  • 92May, 2019
  • 87November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 14December, 2017
  • 14October, 2018
  • 12October, 2017
  • 10November, 2019
  • 3March, 2020
Available data
  • 803bigWig
  • 785bed narrowPeak
  • 719bam
  • 349bigBed narrowPeak
  • 321tagAlign
  • 164fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 945Homo sapiens
Biosample type
  • 601tissue
  • 236primary cell
  • 76in vitro differentiated cells
  • 36cell line
  • 2stem cell
Organ
  • 187brain
  • 135pancreas
  • 97heart
  • 85liver
  • 81epithelium
  • 71vasculature
  • 70blood vessel
  • 54connective tissue
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 863AMP
  • 88T1D
Genome assembly (visualization)
  • 738GRCh38
  • 718hg19
Lab
  • 779AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

951 results

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Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
embryonic stem cell22
neural progenitor cell14
adipocyte13
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG217
EndoC_BH112
Panc17
stem cell
hESC2
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