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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 409ChIP-seq
Assay category
  • 409DNA binding
Target of assay
  • 951histone modification
  • 950histone
  • 485narrow histone mark
  • 464broad histone mark
  • 409transcription factor
  • 321control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 176November, 2017
  • 42November, 2018
  • 41August, 2017
  • 40December, 2017
  • 26December, 2018
  • 16May, 2021
  • 14October, 2018
  • 11August, 2021
  • 10January, 2019
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 392bigWig
  • 380bam
  • 365bed narrowPeak
  • 349fastq
  • 307bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 409Homo sapiens
Biosample type
  • 268cell line
  • 90tissue
  • 41in vitro differentiated cells
  • 10primary cell
Organ
  • 251liver
  • 43blood
  • 43bodily fluid
  • 34connective tissue
  • 18pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9vasculature
  • 8blood vessel
  • 7epithelium
  • 5artery
  • 3brain
  • 3embryo
  • 3spleen
  • 1eye
Project
  • 409AMP
Genome assembly (visualization)
  • 386hg19
  • 344GRCh38
Lab
  • 381AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 27inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 34missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.read_length!
  • 76
BIOSAMPLE
ASSAY

409 results

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Clear Filters
ChIP-seq
cell line
HepG2212
GM1287843
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas8
islet of Langerhans7
heart left ventricle5
in vitro differentiated cells
adipocyte16
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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