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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92total RNA-seq
  • 75single cell RNA-seq
  • 49ATAC-seq
  • 48snATAC-seq
  • 47WGBS
  • 3Hi-C
Assay category
  • 167Transcription
  • 97DNA accessibility
  • 47DNA methylation
  • 33D chromatin structure
Date released
  • 134May, 2022
  • 76February, 2023
  • 58September, 2020
  • 36February, 2021
  • 7August, 2020
  • 3October, 2022
Available data
  • 159fastq
  • 153zippedFastqFolder
  • 10bigWig
  • 6tsv
  • 3bedpe bed3+
  • 3cool
  • 3hic
Organism
  • 314Homo sapiens
Biosample type
  • 314primary cell
Organ
  • 152epithelium
  • 152pancreas
Project
  • 314HPAP
Genome assembly (visualization)
  • 10GRCh38
  • 3hg19
Lab
  • 3912AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 314Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
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  • 91
BIOSAMPLE
ASSAY

314 results

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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell7548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
pancreatic acinar cell41
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