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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126ChIP-seq
  • 31total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 126DNA binding
  • 59Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 97transcription factor
  • 26control
  • 17RNA binding protein
  • 3chromatin remodeller
Date released
  • 37November, 2017
  • 31December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 13August, 2017
  • 13November, 2018
  • 9February, 2018
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 220fastq
  • 196bam
  • 146bigWig
  • 119bed narrowPeak
  • 95bigBed narrowPeak
  • 41tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 222Homo sapiens
Biosample type
  • 82tissue
  • 81cell line
  • 50primary cell
  • 9in vitro differentiated cells
Organ
  • 82pancreas
  • 46liver
  • 41blood
  • 41bodily fluid
  • 40epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 3embryo
Project
  • 198AMP
  • 24HPAP
Genome assembly (visualization)
  • 161hg19
  • 146GRCh38
Lab
  • 174AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
files.read_length!
  • 101
BIOSAMPLE
ASSAY

222 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
cell line
GM1287841
HepG240
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm3
definitive endodermal cell1
embryonic stem cell1
endocrine cell1
islet precursor cell1
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