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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
31
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
11
WGBS
Assay category
126
DNA binding
59
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
97
transcription factor
26
control
17
RNA binding protein
3
chromatin remodeller
Date released
37
November, 2017
31
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
13
August, 2017
13
November, 2018
9
February, 2018
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
220
fastq
196
bam
146
bigWig
119
bed narrowPeak
95
bigBed narrowPeak
41
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
222
Homo sapiens
Biosample type
82
tissue
81
cell line
50
primary cell
9
in vitro differentiated cells
Organ
82
pancreas
46
liver
41
blood
41
bodily fluid
40
epithelium
26
adipose tissue
26
connective tissue
8
spleen
3
embryo
Project
198
AMP
24
HPAP
Genome assembly (visualization)
161
hg19
146
GRCh38
Lab
174
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
files.read_length!
101
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
cell line
GM12878
41
HepG2
40
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
3
definitive endodermal cell
1
embryonic stem cell
1
endocrine cell
1
islet precursor cell
1
+ See 2 more…
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